Single-Crystal Diffractometer

Mission Statement
TOPAZ is a high-resolution single-crystal diffractometer using wavelength-resolved Laue technique with an extensive array of neutron time-of-flight area detectors to address structural problems in diverse research areas: chemistry, earth sciences, materials science, engineering, and solid-state physics.
Instrument Description
Experiments can be conducted in ambient conditions or controlled sample environments for parametric study (temperature and electric field). A nitrogen cold stream offers temperature control in the range of 90 K to 450 K or a cryogenic goniometer equipped with a pulsed tube helium compressor offers temperature control in the range of 5 K to 300 K. Variable and static electric fields can be applied for the stroboscopic study of ferroelectric materials. The wide neutron wavelength band is well suited for efficient 3D Q space mapping of Bragg and diffuse scattering originating from magnetic and nuclear interactions simultaneously.
TOPAZ samples can be oriented with high precision for volumetric sampling of Bragg peaks in specific directions. Currently, TOPAZ has 25 of 48 detector ports populated with Anger camera modules covering a scattering angle between 20 and 160° in 2θ, matching 3.2 sr in solid angle coverage. A full dataset for structure analysis can be collected with 4 to 25 settings with an exposure time of about 0.5–5 hours each, depending on the crystal symmetry, sample scattering strength, and crystal size.
Applications
TOPAZ is well suited for determining atomic positions and displacement parameters of light elements (such as hydrogen) next to heavy metals. Moreover, the broad Q coverage makes TOPAZ ideal for studying magnetic structures, phase transitions, disorder, and local structure phenomena. Examples span a wide range of materials:
- Functional inorganic materials for studying the interplay of nuclear and magnetic structures such as doping-driven structural distortion in iridates; Fe and Co site occupancies in a molecular precursor
- Hydrogen bonding, guest-host interaction, and guest mobility in hydride perovskites; high-pressure synthesized mantle mineral and self-assembling tertiary amines
- Catalytic and dihydrogen activation or exchange materials for the study of metal-hydrogen bonding in electrocatalyst and nano-sized copper clusters
- Accurate atomic position and displacement parameters for charge density study of organic crystals containing a high percentage of hydrogen atoms
Specifications
| Moderator | Decoupled poisoned supercritical hydrogen |
| Source to sample distance | 18 m |
| Sample to detector distance, evacuated | 39 – 46 cm |
| Detector coverage | 3.2 sr, 25 detectors |
| Detector size | 15 x 15 cm2 with 256 by 256 pixels |
| Detector angular range | 20 –160º 2θ; +/- 32° out-of-plane |
| Wavelength bandwidth | 3.1 Å |
| Frame 1 | 0.4 – 3.5 Å |
| Resolution | > 0.4% Δd/d |
| Sample size | > 0.05 mm3 in volume and > 0.1 mm on an edge |
| d spacing range | 0.25 Å – 14 Å |
| Q range | 0.45 – 25 Å-1 |
| Neutron beam sizes | 2.0 – 5.0 mm diameter |
| Neutron beam divergence on sample | 15 mrad – 25 mrad |
| Sample Environment | Ambient goniometer with c fixed at 135° ω: 0°–360° Φ: 0–360° Oxford Cryosystems Cobra 800 open-flow N2 gas stream: 90 – 450 K Cryogenic goniometer with precision motor controls for sample centering ω: 0°–360° Cryogen-free pulse-tube cryocooler with a helium compressor (Cryomech PT415-RM): 5 K – 300 K |
TOPAZ Instrument Team
Please select link below to email the instrument team. Be sure to include your name and email address.
Announcements
TOPAZ has the Cryogoniometer commissioned in February 2020 for data collection in the temperature range of 5 K to 300 K.
Useful Links for TOPAZ Users
Shipping Addresses for Samples
Please visit the ORNL User Facilities Sample Handling and Shipping page.
How to access TOPAZ data
Resources are available to help reduce and analyze the data collected during your experiment. Data is accessed and reduced remotely on the SNS analysis cluster using mantid. A good tool to obtain a summary of your measured data is through ONCat. Visit the Data Management page for more information.
Step by step instructions for TOPAZ Data Access.
- Create an ORNL Resource account (if you don’t already have one) at the ORNL Guest Portal.
- Once you have an account, you can login to our analysis cluster by clicking on Launch Session at https://analysis.sns.gov. Alternatively, you may install the ThinLinc client on your local machine.
- Once you login, under your home directory you will see the following folder structure /data/SNS/TOPAZ/IPTS-######/. All the run numbers will appear for your data. (Alternatively, you can find your data in /SNS/TOPAZ/IPTS-#####/shared/autoreduce.) Your automatically reduced data can be found in the /shared/autoreduce folder. A summary of your experiment is available through OnCat, a web tool that allows you to browse through the archived data. To access ONCat, go to https://oncat.ornl.gov/#/
- Secure ftp or secure shell (SSH) will allow you to copy the data to your local drive. Select one of the programs below to download and install: FileZilla or Cyberduck.
Enter the following information to connect to the analysis computers:
Host: analysis.sns.gov
Your username and password
Port: 22
Data Reduction and Analysis
Data Reduction scripts are stored in the /SNS/TOPAZ/IPTS-xxxxx/shared/ReductionGUI folder in the analysis computer, Calibration and spectrum files are located in the /SNS/TOPAZ/IPTS-xxxxx/shared/calibration folder, where IPTS-xxxxx is the IPTS number for individual user experiment.
TOPAZ Data are reduced into the SHELX HKLF 2 format using mantid python script in the ReductionGUI folder:
- Extension .hkl: Each reflection are numbered with banks which correspond to the wavelength used. Please use the corresponding bank # from the parameter files for refinements
Instructions for data reduction and tutorial documents are located in /SNS/TOPAZ/IPTS-xxxxx/shared/Documents folder.
Data Reduction and Analysis Tutorials
- Single Crystal Neutron Diffraction
- NeuXtalViz: TOPAZ Tutorials
- NeuXtalViz: Slice Viewer
- Mantid Workbench: Slice Viewer
- Plot 2D Slice from 3D MD data
- Mantid Workbench: Peaks Work Space
- Peak Integration
- Modulated Crystal
- SHELXL refinement example
- GSAS/EXPGUI refinement example
- GSAS-II refinement example
- Jana2020 refinement example
Links Related to Neutron Scattering and Crystallography
- Neutron scattering lengths and cross sections http://www.ncnr.nist.gov/resources/n-lengths/index.html
- Calculate absorption, basic activation calculation http://www.ncnr.nist.gov/resources/activation/
- Inorganic Crystallographic Structure Database (ICSD) https://icsd.fiz-karlsruhe.de/search/basic.xhtml
- The Cambridge Structural Database (CSD) https://www.ccdc.cam.ac.uk/solutions/csd-core/components/csd/
- Bilbao Crystallographic Server https://www.cryst.ehu.es/
Lecture Notes and Example Data
- Chemical Crystallography: Refinement of small molecules against neutron data
- Magnetism and Modulated Crystal: Please refer to the Workshop Materials page from the Workshop on Symmetry and Superspace Approach to Modulated Crystal Structures for example data and tutorials.
User Publications
ntent to Publish
As a condition for performing nonproprietary research, the US Department of Energy requires users to publish results from their research. Authorship of publications based on research from these facilities should reflect the normal considerations of recognizing collaborations. It is also important to take into account the considerable efforts of the instrument scientists in their role of designing, constructing, and/or operating the instrument and related facilities. Results are typically published in peer-reviewed journals, proceedings, or presentations at technical conferences. Proprietary users are not required to publish.
Credit Line
- The TOPAZ Single Crystal Neutron TOF Laue Diffractometer should be acknowledged with this required statement:
- This research [or, A portion of this research] used resources at the Spallation Neutron Source, a DOE Office of Science User Facility operated by the Oak Ridge National Laboratory.
- Reference to the instrument can be found here: Coates L., Cao H.B., Chakoumakos B.C., Frontzek M., Hoffmann C., Kovalevsky A., Liu Y., Meilleur F., dos Santos A.M., Myles D.A., Wang X.P., Ye F., “A suite-level review of the neutron single-crystal diffraction instruments at Oak Ridge National Laboratory”, Review of Scientific Instruments, 89, 9, 092802 (2018).
Publication Record
Please submit publications, thesis, patents, etc., to PuSH (Publications of SNS and HFIR) to assist us in recording your contribution. Both the credit statement and links to PuSH are on the Neutron Sciences Publications website.